To start a local gigaDB server docker-compose run --rm webapp
Link to test if the web page is up
If there are some build errors Rebuild and up the webapp containers again.
docker-compose run --rm webapp If not work, restart the docker container app and rebuild the containers. If not work, check if psql, gigadb, database is presented in ~/.containers/-data and remove it.
rm -rf ~/.containers-data/gigadb Run docker-compose run --rm webapp again to rebuild the containers. How to remove images List all images
docker images -a Remove all images
docker rmi $(docker images -a -q) How to remove container List all containers
docker ps -a Stop the containers
docker stop $(docker ps -a -q) Remove stopped containers
docker rm $(docker ps -a -q)
source
digital ocean How to run a functional test in a docker environment for testing? Write unit test script and place in protected/tests/functional-test folder. Change the unit_functional script ./bin/phpunit protected/tests/functional-test --verbose --configuration protected/tests/phpunit.xml --no-coverage Run specific unit test:
docker-compose run --rm test ./tests/unit_functional Output will be like this: PHPUnit 5.7.27 by Sebastian Bergmann and contributors. Runtime: PHP 7.1.30 with Xdebug 2.9.6 Configuration: /var/www/protected/tests/phpunit.xml ... 3 / 3 (100%) Time: 7.15 seconds, Memory: 14.00MB OK (3 tests, 7 assertions) How to run a functional test on a single file in docker environment? docker oneliner
docker-compose run --rm test ./bin/phpunit --testsuite functional --bootstrap protected/tests/bootstrap.php --verbose --configuration protected/tests/phpunit.xml --no-coverage protected/tests/functional/AdminSiteAccessTest.php Or go into docker bash and run phpunit
docker-compose run --rm test bash
root@45a46a8441d3:/var/www# ./bin/phpunit --testsuite functional --bootstrap protected/tests/bootstrap.php --verbose --configuration protected/tests/phpunit.xml --no-coverage protected/tests/functional/AdminSiteAccessTest.php root@45a46a8441d3:/var/www# ./bin/phpunit --testsuite functional --bootstrap protected/tests/bootstrap.php --verbose --configuration protected/tests/phpunit.xml --no-coverage protected/tests/functional/AdminSiteAccessTest.php PHPUnit 5.7.27 by Sebastian Bergmann and contributors. Runtime: PHP 7.1.30 with Xdebug 2.9.6 Configuration: /var/www/protected/tests/phpunit.xml ... 3 / 3 (100%) Time: 4.18 seconds, Memory: 14.00MB OK (3 tests, 7 assertions) How to run a Behat test in a docker environment for testing Update the scenario syntax specific *.feature file, like: @ok @files Scenario: Files - Call to Actions Given I am not logged in to Gigadb web site When I go to "/dataset/101001" And I follow "Files" Then I should see a link "(FTP site)" to "ftp://climb.genomics.cn/pub/10.5524/101001_102000/101001/" with title "FTP site" Then I should see a button "Table Settings" Check if related functions in features/bootstrap/*.php needed to be updated, eg: public function iShouldSeeTabWithTable($arg1, TableNode $table) { if ("Funding" == $arg1) { $this->minkContext->getSession()->getPage()->clickLink($arg1); //| Funding body | Awardee | Award ID | Comments | foreach($table as $row) { PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Funding body']) ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Awardee']) ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Award ID']) ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Comments']) ); } } elseif("Files" == $arg1) { //| File name | Sample ID | Data Type | File Format | Size | Release date | link | foreach($table as $row) { $link = $row['link']; PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['File name']), "File name match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Sample ID']), "Sample ID match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Data Type']), "Data Type match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['File Format']), "File Format match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Size']), "Size match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Release date']), "Release date match" ); if ($link) { $this->minkContext->assertSession()->elementExists('css',"a.download-btn[href='$link']"); } } } elseif("Sample" == $arg1) { //| Sample ID | Common Name | Scientific Name | Sample Attributes | Taxonomic ID | Genbank Name | foreach($table as $row) { PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Sample ID']), "Sample ID match" ); if($row['Common Name']) { PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Common Name']), "Common Name match" ); } PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Scientific Name']), "Scientific Name match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Sample Attributes']), "Sample Attributes match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Taxonomic ID']), "Taxonomic ID match" ); PHPUnit_Framework_Assert::assertTrue( $this->minkContext->getSession()->getPage()->hasContent($row['Genbank Name']), "Genbank Name match" ); } } else { PHPUnit_Framework_Assert::fail("Unknown type of tab"); } } Assign @wip tag to the working scenario in .feature file, this can smooth the running of behat test. @wip @files Scenario: Files - Call to Actions Given I am not logged in to Gigadb web site When I go to "/dataset/101001" Run the Behat test command on specific scenario.
docker-compose run --rm test bin/behat -vv --stop-on-failure --tags @wip
...